ID	Organism	Assembly	File type	Name	Source	Reference	Owner	Public
	Human	hg38	Bed	ENCODE Candidate Cis-Regulatory Elements (cCREs) combined from all cell types	UCSC hgdownload	—	admin	✔
	Human	hg38	Bed	Genes from BIOMART	Custom R script	—	admin	✔
	Human	hg38	Bed	Haploinsufficiency Predictions (Deletions)	Decipher Genomics	—	admin	✔
	Human	hg38	Bed	Hi-C Immortalized Liver cells (DpnII) TADs	Job Dekker, UMMS	—	admin	✔
	Human	hg38	Bed	Hi-C Neural progenitor cells (MboI) TADs	NEUROD1 Intrinsically Initiates Differentiation of Induced Pluripotent Stem Cells into Neural Progenitor Cells	—	admin	✔
	Human	hg38	Bed	Hi-C gm12878 (MboI) TADs	Rao SS et al. (2014) PMID:25497547	—	admin	✔
	Human	hg38	Bed	Hi-C immortalized Blood Cells (HindIII) TADs	Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics. Belaghzal H, Borrman T, et al., Nature genetics 2021	—	admin	✔
	Human	hg38	Bed	Hi-C immortalized Fibroblasts (DpnII) TADs	Systematic evaluation of chromosome conformation capture assays. Akgol Oksuz B, Yang L, et al., Nature methods 2021	—	admin	✔
	Human	hg38	Bed	Hi-C induced pluripotent stem cells (DpnII) TADs	Job Dekker, UMMS	—	admin	✔
	Human	hg38	Bed	Hi-C primary Lung cells (MboI) TADs	A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Rao SS, Huntley MH, et al., Cell 2014	—	admin	✔
	Human	hg38	Bed	Hi-C stem cell derived Cardiac muscle cells (MboI) TADs	Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells. Zhang Y, Li T, et al., Nature genetics 2019	—	admin	✔
	Human	hg38	Bed	Hi-C stem cell derived myoblasts (MboI) TADs	Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells. Zhang Y, Li T, et al., Nature genetics 2019	—	admin	✔
	Human	hg38	Bed	NCBI RefSeq Functional Elements	UCSC hgdownload	—	admin	✔
	Human	hg38	Bed	NCBI RefSeq Genes All	UCSC hg tables	—	admin	✔
	Human	hg38	Bed	Predicted enhancer-promoter connections (ENCODE)	The accessible chromatin landscape of the human genome	—	admin	✔
	Human	hg38	Bed	Triplosensitivity scores (Duplications)	ClinGen Dosage Sensitivity Map	—	admin	✔
	Human	hg38	Bed	crawlergo@gmail.com	ClinGen Dosage Sensitivity Map	—	admin	✔
	Human	hg38	Bed	pLI score (gnomAD)	http://exac.broadinstitute.org/	—	admin	✔
	Human	hg38	BedGraph	DNase I Hypersensitivity Signal	UCSC hgdownload	—	admin	✔
	Human	hg38	BedGraph	H3K27Ac 7 cell lines	UCSC hgdownload	—	admin	✔
	Human	hg38	BedGraph	H3K4Me1 7 cell lines	UCSC hgdownload	—	admin	✔
	Human	hg38	BedGraph	H3K4Me3 7 cell lines	UCSC hgdownload	—	admin	✔
	Human	hg38	BedGraph	PhastCons conservation	UCSC hgdownload	—	admin	✔
	Human	hg38	BedGraph	PhyloP conservation	UCSC hgdownload	—	admin	✔
	Human	hg38	BedGraph	Transcription Levels RNA-seq	UCSC hgdownload	—	admin	✔