Phenotypes
Db Link Name Definition Comment Is a
HPO HP:0000133 Gonadal dysgenesis HP:0000812
HPO HP:0012244 Abnormal sex determination "Anomaly of primary or secondary sexual development or characteristics." [HPO:probinson, MP:0002210] HP:0012243
HPO HP:0008232 Elevated circulating follicle stimulating hormone level "An elevated concentration of follicle-stimulating hormone in the blood." [HPO:probinson] HP:0000837, HP:0030346
HPO HP:0000045 Abnormality of the scrotum HP:0000032
HPO HP:0000100 Nephrotic syndrome "Nephrotic syndrome is a collection of findings resulting from glomerular dysfunction with an increase in glomerular capillary wall permeability associated with pronounced proteinuria. Nephrotic syndrome refers to the constellation of clinical findings that result from severe renal loss of protein, with Proteinuria and hypoalbuminemia, edema, and hyperlipidemia." [HPO:probinson] In adults, nephrotic syndrome is characterized by protein excretion of 3.5 g or more per day. In children, nephrotic syndrome is accompanied by protein excretion of more than 40 mg/m2/h and hypalbuminemia < 2.5 mg/dl. HP:0012211
HPO HP:0040171 Decreased serum testosterone concentration HP:0030087, HP:0030349
HPO HP:0000815 Hypergonadotropic hypogonadism "Reduced function of the gonads (testes in males or ovaries in females) associated with excess pituitary gonadotropin secretion and resulting in delayed sexual development and growth delay." [HPO:curators] HP:0000135
HPO HP:0008665 Clitoral hypertrophy "Hypertrophy of the clitoris." [HPO:probinson] Increased size of the clitoris. HP:0040253
HPO HP:0000028 Cryptorchidism "Testis in inguinal canal. That is, absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the scrotum." [HPO:probinson, PMID:23650202] The gonad is mobile and can be retracted superiorly by the cremaster muscle reflex stimulated, for instance, by cold or touch. A retracted testis is not cryptorchidism. An abdominal testis cannot be distinguished by physical examination from an (Apparently) absent testis and requires radiological (or, rarely, surgical) procedures for assessment. HP:0000035
HPO HP:0000062 Ambiguous genitalia "A genital phenotype that is not clearly assignable to a single gender. Ambiguous genitalia can be evaluated using the Prader scale: Prader 0: Normal female external genitalia. Prader 1: Female external genitalia with clitoromegaly. Prader 2: Clitoromegaly with partial labial fusion forming a funnel-shaped urogenital sinus. Prader 3: Increased phallic enlargement. Complete labioscrotal fusion forming a urogenital sinus with a single opening. Prader 4: Complete scrotal fusion with urogenital opening at the base or on the shaft of the phallus. Prader 5: Normal male external genitalia. The diagnosis of ambiguous genitalia is made for Prader 1-4." [HPO:probinson, PMID:15102623] Note that this term can include or combine variations in size and shape, with partial or complete absence of structures. It is preferable to describe the individual components, which are defined below. It is nonetheless a widely used bundled term and as such is retained here. The distinction of this finding from a marked degree of Hypospadias is an example of how this term can be problematic. Genetic gender is determined at fertilization, whereby the presence of a Y chromosome determines male gender. Normally, genetic gender determines gonadal gender which in turn determines phenotypic gender. Testicular development is an active process requiring expression of the primary testis determining gene SRY, which is located on the Y chromosome. HP:0000811
HPO HP:0008730 Female external genitalia in individual with 46,XY karyotype "The presence of female external genitalia in a person with a male karyotype." [HPO:probinson] HP:0000032
HPO HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." [] HP:0001626
HPO HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators] HP:0000927
HPO HP:0000054 Micropenis "Abnormally small penis. At birth, the normal penis is about 3 cm (stretched length from pubic tubercle to tip of penis) with micropenis less than 2.0-2.5 cm." [HPO:probinson, PMID:15102623] HP:0008736
HPO HP:0008214 Decreased serum estradiol "A reduction below normal concentration of estradiol in the circulation." [] HP:0025133
HPO HP:0008734 Decreased testicular size "Reduced volume of the testicle (the male gonad)." [HPO:probinson] HP:0000050, HP:0010468
HPO HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO criteria, osteoporosis is defined as a BMD that lies 2.5 standard deviations or more below the average value for young healthy adults (a T-score below -2.5 SD)." [HPO:probinson, PMID:28293453] Osteoporosis is a disease that is characterized by low bone mass, deterioration of bone tissue, and disruption of bone microarchitecture: it can lead to compromised bone strength and an increase in the risk of fractures. HP:0004349
HPO HP:0008193 Primary gonadal insufficiency HP:0008373
HPO HP:0000868 Decreased fertility in females HP:0000144
HPO HP:0000030 Testicular gonadoblastoma "The presence of a gonadoblastoma of the testis." [HPO:probinson] HP:0000150, HP:0010788
HPO HP:0008187 Absence of secondary sex characteristics "No secondary sexual characteristics are present at puberty." [HPO:probinson] HP:0008373
HPO HP:0000823 Delayed puberty "Passing the age when puberty normally occurs with no physical or hormonal signs of the onset of puberty." [HPO:probinson] The age at which delayed puberty may be diagnosed in a person without signs of secondary sexual development is 13 years in a girl or 14 years in a boy. HP:0001510, HP:0008373
HPO HP:0002667 Nephroblastoma "The presence of a nephroblastoma, which is a neoplasm of the kidney that primarily affects children." [HPO:probinson] Nephroblastoma is characterized by an abnormal proliferation of the metanephric blastema cells, which are believed to be primitive embryologic cells of the kidney. Clinically, nephroblatoma usually presents as an abdominal mass, and in some cases with abdominal pain, hypertension, hematuria, and fever. HP:0011794
HPO HP:0000058 Abnormal labia morphology "An anomaly of the labia, the externally visible portions of the vulva." [HPO:probinson] HP:0000055
HPO HP:0010464 Streak ovary "A developmental disorder characterized by the progressive loss of primordial germ cells in the developing ovaries of an embryo, leading to hypoplastic ovaries composed of wavy connective tissue with occasional clumps of granulosa cells, and frequently mesonephric or hilar cells." [HPO:probinson] HP:0008724