Phenotypes
Db Link Name Definition Comment Is a
HPO HP:0010864 Intellectual disability, severe "Severe mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson] Persons with severe mental retardation can be taught basic life skills and simple tasks with supervision. HP:0001249
HPO HP:0004442 Sagittal craniosynostosis "A kind of craniosynostosis affecting the sagittal suture." [HPO:probinson] — HP:0001363
HPO HP:0002342 Intellectual disability, moderate "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 35-49." [HPO:curators] — HP:0001249
HPO HP:0005469 Flat occiput "Reduced convexity of the occiput (posterior part of skull)." [PMID:19125436] Reduced convexity of the occiput gives an appearance of flattening. There are no objective measures for convexity of the occiput, and evaluation depends heavily on the experience of the observer. This finding may or may not be accompanied by Brachycephaly (which should be coded separately), and may be observed more frequently when an infant is placed to sleep on his/her back. Occipital plagiocephaly can result from fusion or sclerosis of the lambdoid suture. If unilateral, this is accompanied by unilateral occipital flattening and bulging of the ispilateral frontal bone. HP:0011217
HPO HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators] — HP:0007370
HPO HP:0000248 Brachycephaly "An abnormality of skull shape characterized by a decreased anterior-posterior diameter. That is, a cephalic index greater than 81%. Alternatively, an apparently shortened anteroposterior dimension (length) of the head compared to width." [HPO:probinson, PMID:19125436] Cephalic index is the ratio of head width expressed as a percentage of head length. The normal range is 76-80.9%. Head length is measured between the glabella (the most prominent point on the frontal bone above the root of the nose) and the most prominent part of the occiput in the midline, using spreading calipers. Head width is measured between the most lateral points of the parietal bones on each side of the head, using spreading calipers. Cephalic index standards are derived from Caucasians and have limited relevance for other races and ethnicities. Current norms also have limited validity because of changes in infant sleeping position and consequent changes in head shape. New data should be developed. Brachycephaly is distinct from Flat occiput, but both can be present in the same individual and should be coded separately. HP:0002648
HPO HP:0000609 Optic nerve hypoplasia "Underdevelopment of the optic nerve." [HPO:probinson] — HP:0002977, HP:0008058
HPO HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:probinson] — HP:0010674
HPO HP:0011318 Bicoronal synostosis "Synostosis affecting the right and the left coronal suture." [DDD:awilkie] — HP:0004440
HPO HP:0000252 Microcephaly "Head circumference below 2 standard deviations below the mean for age and gender." [PMID:15806441, PMID:19125436, PMID:25465325, PMID:9683597] Head circumference is measured from just above the glabella (the most prominent point on the frontal bone above the root of the nose) to the most posterior prominent point of the occipital bone using a tape measure. Some standard charts are organized by centiles, others by standard deviations. It is important to add an indication of how far below the normal standard the head circumference is if an accurate assessment of this can be made. Microcephaly is an absolute term. The term relative microcephaly can be used when the head size centile is less than the centile for height, for example, head size at the 3rd centile with height at the 75% for age and sex. On prenatal ultrasound, microcephaly is diagnosed if the head circumference or the biparietal diameter is more than three standard deviations below the mean. Microcephaly is divided into primary microcephaly, which is present at birth, and secondary microcephaly, which develops postnatally. The crucial difference between these groupings is that primary microcephaly is usually a static developmental anomaly, whereas secondary microcephaly indicates a progressive neurodegenerative condition HP:0007364, HP:0040195
HPO HP:0000324 Facial asymmetry "An abnormal difference between the left and right sides of the face." [HPO:probinson] — HP:0001999
HPO HP:0006956 Dilation of lateral ventricles — — HP:0002119, HP:0030047
HPO HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators] — HP:0000005
HPO HP:0000508 Ptosis "The upper eyelid margin is positioned 3 mm or more lower than usual and covers the superior portion of the iris (objective); or, the upper lid margin obscures at least part of the pupil (subjective)." [PMID:19125427] — HP:0012373
HPO HP:0012110 Hypoplasia of the pons "Underdevelopment of the pons." [HPO:probinson] — HP:0002977, HP:0007361
HPO HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:probinson] — HP:0000290
HPO HP:0001249 Intellectual disability "Subnormal intellectual functioning which originates during the developmental period. Intellectual disability, previously referred to as mental retardation, has been defined as an IQ score below 70." [HPO:probinson] This term should be used for children at least five years old. For younger children, consider the term Global developmental delay (HP:0001263). HP:0011446, HP:0012759
HPO HP:0004443 Lambdoidal craniosynostosis "A kind of craniosynostosis affecting the lambdoidal suture." [HPO:probinson] — HP:0001363
HPO HP:0000294 Low anterior hairline "Distance between the hairline (trichion) and the glabella (the most prominent point on the frontal bone above the root of the nose), in the midline, more than two SD below the mean. Alternatively, an apparently decreased distance between the hairline and the glabella." [PMID:19125436] This feature gives the appearance of a short forehead. It is distinct from hirsutism of the forehead. In the latter, orientation of hair growth is lateral and texture and density of hair differs from scalp hair. HP:0000599
HPO HP:0000494 Downslanted palpebral fissures "The palpebral fissure inclination is more than two standard deviations below the mean." [PMID:19125427] — HP:0200006
HPO HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman's terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:probinson, PMID:26246090] — HP:0001320, HP:0002198, HP:0002350, HP:0005445
HPO HP:0001476 Delayed closure of the anterior fontanelle "A delay in closure (ossification) of the anterior fontanelle, which generally undergoes closure around the 18th month of life." [HPO:probinson] — HP:0000236, HP:0000270
HPO HP:0000729 Autistic behavior "Persistent deficits in social interaction and communication and interaction as well as a markedly restricted repertoire of activity and interest as well as repetitive patterns of behavior." [HPO:probinson, PMID:28879490] This term can be used to refer to autism spectrum disorder as a phenotypic feature that can be a component of a disease. Autism spectrum disorder range from a severe form, called autistic disorder, to a milder form, Asperger syndrome. HP:0000708
HPO HP:0000486 Strabismus "A misalignment of the eyes so that the visual axes deviate from bifoveal fixation. The classification of strabismus may be based on a number of features including the relative position of the eyes, whether the deviation is latent or manifest, intermittent or constant, concomitant or otherwise and according to the age of onset and the relevance of any associated refractive error." [HPO:probinson, PMID:26319345, UManchester:psergouniotis] — HP:0000549
HPO HP:0003298 Spina bifida occulta "The closed form of spina bifida with incomplete closure of a vertebral body with intact overlying skin." [HPO:probinson] May be asymptomatic. HP:0002414